Class BamConverter

java.lang.Object
htsjdk.samtools.BamConverter
public class BamConverter extends Object
Simple command-line tool for reading and optionally converting BAM files, primarily for experimenting with BAM read-path profiling.

Usage: 

  java -cp htsjdk.jar htsjdk.samtools.BamConverter input.bam [output.bam]

If no output is specified, records are read and iterated but not written.

  • Constructor Details

    • BamConverter

      public BamConverter()

  • Method Details

    • main

      public static void main(String[] args)
      Entry point. Parses command-line arguments and performs the read/conversion.
      Parameters:
      args - command-line arguments (see USAGE for details)