htsjdk.samtools.util.IntervalList.IntervalMergerIterator

All Implemented Interfaces:: Iterator<Interval>

Enclosing class:: IntervalList

public static class IntervalList.IntervalMergerIterator extends Object implements Iterator<Interval>

An iterator that feeds on an Iterator<Interval> and combines consecutive intervals that need merging. Overlapping intervals will always be merged, abutting intervals are optionally merged. The iterator assumes that the intervals are sorted. Results are undefined if they are not sorted.

Constructor Summary

Constructors

Constructor

Description

IntervalMergerIterator(Iterator<Interval> intervals, boolean combineAbuttingIntervals, boolean enforceSameStrand, boolean concatenateNames)
Method Summary

Modifier and Type

Method

Description

boolean

hasNext()

Interval

next()

Methods inherited from class Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface Iterator
forEachRemaining, remove

Constructor Details
- IntervalMergerIterator
  
  public IntervalMergerIterator(Iterator<Interval> intervals, boolean combineAbuttingIntervals, boolean enforceSameStrand, boolean concatenateNames)
Method Details
- hasNext
  
  public boolean hasNext()
  
  Specified by:
  
  hasNext in interface Iterator<Interval>
- next
  
  public Interval next()
  
  Specified by:
  
  next in interface Iterator<Interval>

Class IntervalList.IntervalMergerIterator

Constructor Summary

Method Summary

Methods inherited from class Object

Methods inherited from interface Iterator

Constructor Details

IntervalMergerIterator

Method Details

hasNext

next