Class SimpleFeature

java.lang.Object
htsjdk.tribble.SimpleFeature
All Implemented Interfaces:
Locatable, Feature
public class SimpleFeature extends Object implements Feature
A simple concrete Feature.

  • Constructor Details

    • SimpleFeature

      public SimpleFeature(String contig, int start, int end)

  • Method Details

    • getContig

      public String getContig()
      Description copied from interface: Locatable
      Gets the contig name for the contig this is mapped to. May return null if there is no unique mapping.
      Specified by:
      getContig in interface Locatable
      Returns:
      name of the contig this is mapped to, potentially null

    • getStart

      public int getStart()
      Specified by:
      getStart in interface Locatable
      Returns:
      1-based start position, undefined if getContig() == null

    • getEnd

      public int getEnd()
      Specified by:
      getEnd in interface Locatable
      Returns:
      1-based closed-ended position, undefined if getContig() == null