Package htsjdk.tribble
package htsjdk.tribble
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ClassDescriptionAbstractFeatureCodec<FEATURE_TYPE extends Feature, SOURCE>Simple basic class providing much of the basic functionality of codecs Every concrete subclass must implement
FeatureCodec.canDecode(String)to indicate whether it can decode the file.AbstractFeatureReader<T extends Feature, SOURCE>jrobinsoAsciiFeatureCodec<T extends Feature>A convenience base class for codecs that want to read in features from ASCII lines.BinaryFeatureCodec<T extends Feature>Implements common methods ofFeatureCodecs that read fromPositionalBufferedStreams.CloseableTribbleIterator<T extends Feature>The basic iterator we use in Tribble, which allows closing and basic iteration.Marker interface for Locatables with Tribble support.FeatureCodec<FEATURE_TYPE extends Feature, SOURCE>The base interface for classes that read in features.A class to represent a header of a feature containing file.FeatureReader<T extends Feature>the basic interface that feature sources need to matchA mutable concrete Feature.Created by IntelliJ IDEA.An interface for features provided via an interval file, e.g.A simple concrete Feature.TabixFeatureReader<T extends Feature, SOURCE>Common, tribble wide constants and static functionsTribbleIndexedFeatureReader<T extends Feature, SOURCE>A reader for text feature files (i.e.